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As you have found out, we don't allow you to physically delete users because of the dependent data (including important historical metrics).
Generally when a user is no longer needed, you just disable the user by setting Active = false.
In the case of a user that you want to switch from SpiraTest > LDAP, just edit the user's profile and check the box to specify that the user is LDAP Managed. Then enter in the user's full LDAP DN path and then the user will be able to connect using their LDAP password.